• Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traits

    Cheng, W, Ramachandran, S, Crawford L

    PLoS Genetics 2020 Vol. 16:e1008855

  • Germline features associated with immune infiltration in solid tumors

    Shahamatdar, S, He, MX, Reyna, MA, Gusev, A, AlDubayan, SH, Van Allen, EM, Ramachandran, S

    Cell Reports 2020 Vol. 30:2900-2908

  • Hierarchical clustering of gene-level association statistics reveals shared and differential genetic architecture among traits in the UK Biobank

    McGuirl, MR (joint first), Smith, SP (joint first), Sandstede, B, Ramachandran, S

    Genetics 2020 Vol. 215:511-529

  • Bayesian estimation of population size changes by sampling Tajima’s Trees

    Palacios, JA, Veber, A, Cappello, L, Wang, Z, Wakeley, J, Ramachandran, S

    Genetics 2019 Vol. 213:967–986

  • Characterization of prevalence and health consequences of uniparental disomy in four million individuals from the general population

    Nakka, P, Smith, SP, O'Donnell-Luria, AH, McManus, KF, 23andMe Research Team, Mountain, JL, Ramachandran, S, Sathirapongsasuti, JF

    American Journal of Human Genetics 2019 Vol. 105:921-932

  • The inference of sex-biased human demography from whole-genome data

    Musharoff, S, Shringarpure, S, Bustamante, CD, Ramachandran, S

    PLoS Genetics 2019 Vol. 15:e1008293

  • No evidence for recent selection at FOXP2 among diverse human populations

    Atkinson, EG, Audesse, AJ, Palacios, JA, Bobo, D, Webb, AE, Ramachandran, S, Henn, BM

    Cell 2018 Vol. 174:1424-1435

  • Missing compared to what? Revisiting heritability, genes and culture

    Feldman, MW, Ramachandran, S

    Philosophical Transactions of the Royal Society B 2018 Vol. 373:20170064

  • Localization of adaptive variants in human genomes using averaged one-dependence estimation

    Sugden, LA, Atkinson, EG, Fischer, AP, Rong, S, Henn, BM, Ramachandran, S

    Nature Communications 2018 Vol. 9:703

  • Novel gene and network associations found for Acute Lymphoblastic Leukemia using case−control and family-based studies in multiethnic populations

    Nakka, P, Archer, NP, Xu, H, Lupo, PJ, Raphael, BJ, Yang, JJ, and Ramachandran, S

    Cancer Epidemiology, Biomarkers, & Prevention 2017 Vol. 26:1531-1539

  • Gene and network analysis of common variants reveals novel associations in multiple complex diseases

    Nakka, P, Raphael, BJ, and Ramachandran, S

    Genetics 2016 Vol. 204:783-798

  • pong: fast analysis and visualization of latent clusters in population genetic data

    Behr, AA, Liu, KZ, Liu-Fang, G, Nakka, P, and Ramachandran, S

    Bioinformatics 2016 Vol. 32:2817-2823

  • Integrating the signatures of demic expansion and archaic introgression in studies of human population genomics

    Alpert Sugden, L and Ramachandran, S

    Current Opinion in Genetics and Development 2016 Vol. 41:140-149

  • A comparison of worldwide phonemic and genetic variation in human populations

    Creanza, N, Ruhlen, M, Pemberton, TJ, Rosenberg, NA, Feldman, MW, and Ramachandran, S

    Proceedings of the National Academy of Sciences USA 2015 Vol. 112:1265-1272

  • Bayesian nonparametric inference of population size changes from sequential genealogies

    Palacios, JA, Wakeley, J, and Ramachandran, S

    Genetics 2015 Vol. 201:281-304

  • Global diversity and risk of human infectious disease outbreaks

    Smith KF, Goldberg M, Rosenthal S, Carlson L, Chen J, Chen C, Ramachandran S

    J Roy Soc Interface 2014 Vol. 11:20140950

  • Genetic variation and RNA binding proteins: tools and techniques to detect functional polymorphisms

    Soemedi R, Vega H, Belmont JM, Ramachandran S, Fairbrother WG

    In: Systems and molecular perspectives to RNA binding protein biology 2014 ed. G Yeo. Springer

  • Network analysis of GWAS data

    Leiserson MDM, Eldridge J, Ramachandran S, Raphael BJ

    Current Opinion in Genetics and Development 2013 Vol. 23:602-610

  • The phosphorus content of common rocks - a potential driver of ecosystem P status

    Porder S, Ramachandran S

    Plant and Soil 2012 Vol. 367:41-55

  • Gene genealogies within a fixed pedigree, and the robustness of Kingman’s coalescent

    Wakeley J, King L, Low BS, Ramachandran S

    Genetics 2012 Vol. 190:1433-1445

  • A test of the influence of continental axes of orientation on patterns of human gene flow

    Ramachandran S, Rosenberg NA

    American Journal of Physical Anthropology 2011 Vol. 146:515-529

  • Hunter-gatherer genomic diversity suggests a southern African origin for modern humans

    Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson JM, Rodríguez-Botiguée L, Ramachandran S, et al.

    Proc Natl Acad Sci USA 2011 Vol. 108:5154-5162

  • Perspectives on human population structure at the cusp of the sequencing era

    Novembre J, Ramachandran S

    Annual Review of Genomics and Human Genetics 2011 Vol. 12:245-274

Papers published before Brown

  • Genetics and genomics of human population structure

    Ramachandran S, Tang H, Gutenkunst R, Bustamante CD

    pp. 589-616. In: Vogel and Motulsky's Human Genetics: Problems and Approaches 2010 4th ed., eds. M Speicher, SE Antonarakis, AG Motulsky. Springer

  • Characterization of X-linked SNP genotypic variation in globally distributed human populations

    Casto AM, Li JZ, Absher D, Myers R, Ramachandran S, Feldman MW

    Genome Biology 2010 Vol. 11:R10

  • Theory of migration: Implications for linguistic evolution

    Ramachandran S, Feldman MW

    In: Ancient Human Migrations: A Multidisciplinary Approach 2009 eds. PN Peregrine, I Peiros, MW Feldman. University of Utah Press

  • Evaluating signatures of sex-specific processes in the human genome

    Bustamante CD, Ramachandran S

    Nature Genetics 2009 (News and Views) Vol. 41:8-10

  • Worldwide human relationships inferred from genome-wide patterns of variation

    Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, Cann HM, Barsh GS, Feldman M, Cavalli-Sforza LL, Myers RM

    Science 2008 Vol. 319:1100-1104

  • Population differentiation and migration: coalescence times in a two-sex island model for autosomal and X-linked loci

    Ramachandran S, Rosenberg NA, Feldman MW, Wakeley J

    Theoretical Population Biology 2008 Vol. 74:291-301

  • Genetic variation and population structure in Native Americans

    Wang S, Lewis Jr. CM, Jakobsson M, Ramachandran S, Ray N, et al.

    PLoS Genetics 2007 Vol. 3:e185

  • Clines, clusters, and the effect of study design on the inference of human population structure

    Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW

    PLoS Genetics 2005 Vol. 1:e70

  • Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa

    Ramachandran S, Deshpande O, Roseman CC, Rosenberg NA, Feldman MW, Cavalli-Sforza LL

    Proc Natl Acad Sci USA 2005 Vol. 102:15942-15947

  • Demographic estimates from Y-chromosome microsatellite polymorphisms: analysis of a worldwide sample

    Macpherson JM, Ramachandran S, Diamond L, Feldman MW

    Human Genomics 2004 Vol. 1:345-354

  • Robustness of the inference of human population structure: a comparison of X-chromosomal and autosomal microsatellites

    Ramachandran S, Rosenberg NA, Zhivotovsky L, Feldman MW

    Human Genomics 2004 Vol. 1:87-97